MirGeneDB 2.1

MirGeneDB ID

Aca-Mir-194-P2

Family name MIR-194 (all species)
Seed GUAACAG
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-194-2
Paralogues Aca-Mir-194-P1 
Orthologues Ami-Mir-194-P2  Bta-Mir-194-P2  Cfa-Mir-194-P2  Cpi-Mir-194-P2  Cpo-Mir-194-P2  Dno-Mir-194-P2  Dre-Mir-194-P2a  Dre-Mir-194-P2b  Ete-Mir-194-P2  Gja-Mir-194-P2  Gmo-Mir-194-P2a  Gmo-Mir-194-P2b  Hsa-Mir-194-P2  Lch-Mir-194-P2  Loc-Mir-194-P2  Mal-Mir-194-P2a  Mal-Mir-194-P2b  Mml-Mir-194-P2  Mmu-Mir-194-P2  Mun-Mir-194-P2  Oan-Mir-194-P2  Ocu-Mir-194-P2  Pbv-Mir-194-P2  Rno-Mir-194-P2  Sha-Mir-194-P2  Spt-Mir-194-P2  Sto-Mir-194-P2  Tni-Mir-194-P2a  Tni-Mir-194-P2b  Xla-Mir-194-P2c  Xla-Mir-194-P2d  Xtr-Mir-194-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)
GL343545.1: 154421-154479 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P2)
Mir-2188 GL343545.1: 105074-105134 [-] UCSC Ensembl
Mir-194-P2 GL343545.1: 154421-154479 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGCCACCGAUGUGUAUGGUUCCCAUCGGCUGUAACAGCAACUCCAUGUGGAAGCAGUCCGGCCGUUCCAGUGGAGCGGCUGUUAUAGUCGGUGGGGGCUGCAAAAGACCCCGGGAGAU
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Structure
        10          20        30        40        50         
AUGCCACCGAUGUGUAU--|                     AA      G     GCAGU 
                   GGUUCCCAUCGGCUGUAACAGC  CUCCAU UGGAA     C
                   UCGGGGGUGGCUGAUAUUGUCG  GAGGUG ACCUU     C
UAGAGGGCCCCAGAAAACG^                     GC      -     GCCGG 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Sk To Wh
Mature sequence

Aca-Mir-194-P2_5p

mirBase accessionMIMAT0021828
Sequence
0- UGUAACAGCAACUCCAUGUGGAA -23
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Star sequence

Aca-Mir-194-P2_3p*

mirBase accessionMIMAT0021830
Sequence
37- CCAGUGGAGCGGCUGUUAUAGU -59
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