MirGeneDB 2.1

MirGeneDB ID

Aca-Mir-130-P1b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-130a-2
Paralogues Aca-Mir-130-P1a  Aca-Mir-130-P1c  Aca-Mir-130-P2a  Aca-Mir-130-P2b  Aca-Mir-130-P3a  Aca-Mir-130-P4a 
Orthologues Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)
GL343684.1: 340820-340882 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1b)
Mir-130-P2b GL343684.1: 336512-336573 [-] UCSC Ensembl
Mir-130-P1b GL343684.1: 340820-340882 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCCAGAUGGCACGAGGUGUCUGUCCACUGCCCUUUUUAUGUUGUACUACUAGUGAACAUGCGCAAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGCAAUGCUCAGUCGACUGAAAUCC
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Structure
        10           20        30        40        50        60 
CUUCCAGAUGGCACGAGG---| U   U   C         U          A  AGUGAACA 
                     UG CUG CCA UGCCCUUUU AUGUUGUACU CU        \
                     AC GAC GGU ACGGGAAAA UGUAACGUGA GA        U
CCUAAAGUCAGCUGACUCGUA^ -   C   U         U          C  AAAACGCG 
 120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Sk To Wh
Star sequence

Aca-Mir-130-P1b_5p*

mirBase accessionMIMAT0021741
Sequence
0- GCCCUUUUUAUGUUGUACUACU -22
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Mature sequence

Aca-Mir-130-P1b_3p

mirBase accessionMIMAT0021740
Sequence
41- CAGUGCAAUGUUAAAAGGGCAU -63
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