MirGeneDB 2.1

MirGeneDB ID

Aca-Let-7-P2a4

Family name LET-7 (all species)
Seed GAGGUAG
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-let-7e
Paralogues Aca-Let-7-P1b  Aca-Let-7-P1c  Aca-Let-7-P1d  Aca-Let-7-P2a1  Aca-Let-7-P2a2  Aca-Let-7-P2a3  Aca-Let-7-P2b1  Aca-Let-7-P2b2  Aca-Let-7-P2b3  Aca-Let-7-P2b4  Aca-Let-7-P2c1  Aca-Let-7-P2c2  Aca-Let-7-P2c3 
Orthologues Aae-Let-7  Ami-Let-7-P2a4  Bge-Let-7  Bpl-Let-7  Cgi-Let-7  Cli-Let-7-P2a4  Cmi-Let-7-P2a4  Cpi-Let-7-P2a4  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dre-Let-7-P2a4a  Dre-Let-7-P2a4b  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Gga-Let-7-P2a4  Gja-Let-7-P2a4  Gmo-Let-7-P2a4a  Gmo-Let-7-P2a4b  Hme-Let-7  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2a4  Lgi-Let-7  Loc-Let-7-P2a4  Mal-Let-7-P2a4a  Mal-Let-7-P2a4b  Mun-Let-7-P2a4  Npo-Let-7  Oan-Let-7-P2a4  Obi-Let-7  Ovu-Let-7  Pbv-Let-7-P2a4  Pfl-Let-7  Pmi-Let-7  Sko-Let-7  Spt-Let-7-P2a4  Spu-Let-7  Tca-Let-7  Tgu-Let-7-P2a4  Tni-Let-7-P2a4a  Tni-Let-7-P2a4b  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(anoCar2)
4: 123683614-123683684 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUACCAACAAAAUGAUGCUGUCCUUGAGGCUGAGGUAGUAGAUUGAAUAGUUGUGGAGCCUUAUUCUCCCUCUGAGCUAACUAUACAAUCUACUGUCUUUCCUAAGGAGACAGUAAAGUCAUCUGCUGCUA
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Structure
        10         20         30        40        50        60     
UUACCAACAAAAUGAUG-     -|  G   CU   GU         A      GUGGAGCCUUAU 
                  CUGUC CUU AGG  GAG  AGUAGAUUG AUAGUU            U
                  GACAG GGA UCC  UUC  UCAUCUAAC UAUCAA            C
AUCGUCGUCUACUGAAAU     A^  A   U-   UG         A      UCGAGUCUCCCU 
 .       120       110       100         90        80        70
Deep sequencing
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3' NTU Yes
MotifsUGUG in loop
Tissue expression
 +
Sk To Wh
Mature sequence

Aca-Let-7-P2a4_5p

mirBase accessionMIMAT0021701
Sequence
0- UGAGGUAGUAGAUUGAAUAGUU -22
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Star sequence

Aca-Let-7-P2a4_3p*

mirBase accessionMIMAT0021702
Sequence
50- CUAUACAAUCUACUGUCUUUC -71
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