MirGeneDB 2.1

MirGeneDB ID

Aae-Mir-3-P2a2

Family name MIR-3 (all species)
Seed CACUGGG
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-309a-2
Paralogues Aae-Mir-3-P2a1  Aae-Mir-3-P2b 
Orthologues Dan-Mir-3-P2  Dma-Mir-3  Dme-Mir-3-P2  Dmo-Mir-3-P2  Dpu-Mir-3  Dsi-Mir-3-P2  Dya-Mir-3-P2 
Node of Origin (locus) A. aegypti
Node of Origin (family) Pancrustacea
Genome context
(Aaeg_L3)
supercont1.150: 907891-907959 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P2a2)
Mir-279-P2b2 supercont1.150: 907335-907413 [+] Ensembl
Mir-2-P5b supercont1.150: 907506-907572 [+] Ensembl
Mir-3-P2a2 supercont1.150: 907891-907959 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGAUUCCAAAAUAUCCACCGAAUGUUAUGCGACUAACUUCGUUCAGUUUGGUGUCAUACGAAGGUUUCCAGUUUCAUCACUGGGCAAAGUUUGUCGCAUAAAUGCAAAUAAUUCGUCCGUUGCGGUUG
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Structure
        10        20          30        40         50        60   
GUGAUUCCAAAAUAUCCACCGAAUG--         U     C       U-|  UGUCAUACGA 
                           UUAUGCGAC AACUU GUUCAGU  UGG          A
                           AAUACGCUG UUGAA CGGGUCA  ACU          G
GUUGGCGUUGCCUGCUUAAUAAACGUA         U     A       CU^  UUGACCUUUG 
       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe To To To
Star sequence

Aae-Mir-3-P2a2_5p*

mirBase accessionNone
Sequence
0- CGACUAACUUCGUUCAGUUUGGU -23
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Mature sequence

Aae-Mir-3-P2a2_3p

mirBase accessionMIMAT0014272
Sequence
47- UCACUGGGCAAAGUUUGUCGCA -69
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