MirGeneDB ID | Aae-Mir-2940 |
Family name |
MIR-2940 (all species) |
Seed |
GUCGACA |
Species |
Yellow fever mosquito (Aedes aegypti) |
MiRBase ID |
aae-mir-2940
|
Paralogues |
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Orthologues |
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Node of Origin (locus) |
A. aegypti
|
Node of Origin (family) |
A. aegypti
|
Genome context (Aaeg_L3) |
supercont1.222: 643960-644064 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UGGUGCGAUUGCAGCAGAUCUUGGAGACAUUGGUUUAUCUUAUCUGUCGAGGCAAGUUAUUUUACCGGAUAGUGUUUCUUUUCGUGAGCAAUCACCACUAUCCAGCUCUUCUUGUCGACAGGGAGAUAAAUCACUGACAUCCGAUGGUCAUUCAUCGAAGGUGGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70 80
UGGUGCGAUUGCAGCAGAUC- GA-| U A GGCAAGUUAUUUUACCGGAUAGUGUUUCUUU
UUGGA CA UGGUUUAUCUU UCUGUCGA U
AGCCU GU ACUAAAUAGAG GGACAGCU C
CGGUGGAAGCUACUUACUGGU ACA^ C - GUUCUUCUCGACCUAUCACCACUAACGAGUG
160 150 140 130 120 110 100 90 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Star sequence |
Aae-Mir-2940_5p* |
mirBase accession | MIMAT0014283 |
Sequence |
0- UGGUUUAUCUUAUCUGUCGAGGC -23
Get sequence
|
Mature sequence |
Aae-Mir-2940_3p |
mirBase accession | MIMAT0014284 |
Sequence |
82- UGUCGACAGGGAGAUAAAUCACU -105
Get sequence
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