MirGeneDB

59 Strongylocentrotus purpuratus microRNA genes
Sort by genome coordinates Motifs Tissue expression
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MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC 32 Bl Eg Ga Ov Pl To To
Spu-Let-7 spu-let-7 LET-7 GAGGUAG MIMAT0009649 None Scaffold22 1041492 1041559 - Bilateria Bilateria Unknown 1
Spu-Mir-1 spu-mir-1 MIR-1 GGAAUGU None MIMAT0009650 Scaffold759 145241 145304 - Bilateria Bilateria No 1
Spu-Mir-7 spu-mir-7 MIR-7 GGAAGAC MIMAT0009651 None Scaffold3711 11573 11638 - Bilateria Bilateria No 1 1
Spu-Mir-8 spu-mir-200 MIR-8 AAUACUG MIMAT0013801 MIMAT0009652 Scaffold762 220821 220883 + Bilateria Bilateria No 1
Spu-Mir-9 spu-mir-9 MIR-9 CUUUGGU MIMAT0009653 MIMAT0009661 Scaffold198 572011 572072 + Bilateria Bilateria No 1 1
Spu-Mir-10-P1 spu-mir-10 MIR-10 ACCCUGU MIMAT0009654 None Scaffold636 528584 528654 + Bilateria Eumetazoa No 1
Spu-Mir-10-P2e spu-mir-2003 MIR-10 ACCCGUA MIMAT0009744 MIMAT0019166 Scaffold22 1063421 1063483 - S. purpuratus Eumetazoa No 1 1
Spu-Mir-10-P2f None MIR-10 ACCCGUA None None Scaffold22 1059979 1060040 - S. purpuratus Eumetazoa Unknown 1
Spu-Mir-10-P3 spu-mir-125 MIR-10 CCCUGAG MIMAT0009667 MIMAT0019161 Scaffold22 1040532 1040594 - Bilateria Eumetazoa No 1 1
Spu-Mir-29-P1 spu-mir-29b MIR-29 AGCACCA None MIMAT0020067 Scaffold299 87171 87234 - Bilateria Bilateria No 1 1
Spu-Mir-29-P2 spu-mir-29a MIR-29 AGCACCA None MIMAT0009656 Scaffold299 88923 88987 - Bilateria Bilateria No 1 1
Spu-Mir-31 spu-mir-31 MIR-31 GGCAAGA MIMAT0009657 None Scaffold97 60329 60391 - Bilateria Bilateria No 1
Spu-Mir-33 spu-mir-33 MIR-33 UGCAUUG MIMAT0009658 None Scaffold173 67129 67190 + Bilateria Bilateria No 1 1
Spu-Mir-34 spu-mir-34 MIR-34 GGCAGUG MIMAT0009659 None Scaffold39 164301 164361 - Bilateria Bilateria No 1 1
Spu-Mir-71 spu-mir-71 MIR-71 GAAAGAC MIMAT0009660 None Scaffold280 441762 441823 - Bilateria Bilateria No 1
Spu-Mir-76 spu-mir-981 MIR-76 UCGUUGU None MIMAT0020068 Scaffold194 647091 647154 - Bilateria Bilateria Unknown
Spu-Mir-92-o11 spu-mir-92a MIR-92 AUUGCAC None MIMAT0009662 Scaffold391 442948 443012 + S. purpuratus Bilateria No 1
Spu-Mir-92-o12 spu-mir-92b MIR-92 AUUGCAC MIMAT0019160 MIMAT0009663 Scaffold391 440806 440873 + S. purpuratus Bilateria No 1
Spu-Mir-92-o13 spu-mir-92c MIR-92 AUUGCAC None MIMAT0009664 Scaffold391 442488 442553 + S. purpuratus Bilateria No
Spu-Mir-92-o55 None MIR-92 AUUGCAC None None Scaffold391 433149 433217 + S. purpuratus Bilateria No 1 1 1
Spu-Mir-92-o56 None MIR-92 AUUGCAC None None Scaffold391 443771 443858 + S. purpuratus Bilateria No 1
Spu-Mir-92-o57 None MIR-92 AUUGCAC None None Scaffold8342 21943 22005 + S. purpuratus Bilateria No 1 1
Spu-Mir-92-o58 None MIR-92 AUUGCAC None None Scaffold8342 22471 22533 + S. purpuratus Bilateria No 1
Spu-Mir-96-P1 spu-mir-96 MIR-96 UUGGCAC MIMAT0009665 None Scaffold192 530591 530664 + Bilateria Bilateria No 1 1
Spu-Mir-96-P2 spu-mir-182 MIR-96 UUGGCAA MIMAT0009670 None Scaffold192 534073 534139 + Bilateria Bilateria No
Spu-Mir-96-P3 spu-mir-183 MIR-96 AUGGCAC MIMAT0009684 None Scaffold192 529030 529097 + Bilateria Bilateria No 1
Spu-Mir-103 spu-mir-2013 MIR-103 GCAGCAU None MIMAT0009742 Scaffold823 265549 265613 + Deuterostomia Deuterostomia No 1 1 1
Spu-Mir-124 spu-mir-124 MIR-124 AAGGCAC None MIMAT0009666 Scaffold285 214032 214092 + Bilateria Bilateria No
Spu-Mir-133 spu-mir-133 MIR-133 UUGGUCC None MIMAT0009668 Scaffold759 29753 29814 - Bilateria Bilateria No 1 1
Spu-Mir-137 spu-mir-137 MIR-137 UAUUGCU None MIMAT0009645 Scaffold365 544151 544208 + Bilateria Bilateria No 1
Spu-Mir-153 spu-mir-153 MIR-153 UGCAUAG MIMAT0019162 MIMAT0009669 Scaffold360 60693 60761 - Bilateria Bilateria No
Spu-Mir-184 spu-mir-184 MIR-184 GGACGGA None MIMAT0009671 Scaffold838 181326 181395 + Bilateria Bilateria No 1 1
Spu-Mir-210-v1 spu-mir-210 MIR-210 UUGUGCG None MIMAT0009646 Scaffold554 214108 214172 + Bilateria Bilateria No 1
Spu-Mir-210-v2 spu-mir-210 MIR-210 UGUGCGU None MIMAT0009646 Scaffold554 214107 214173 + Bilateria Bilateria No 1
Spu-Mir-219 spu-mir-219 MIR-219 GAACUGU MIMAT0009685 MIMAT0022953 Scaffold392 474637 474697 + Bilateria Bilateria No 1
Spu-Mir-242 spu-mir-242 MIR-242 UGCGUAG MIMAT0009647 None Scaffold117 988993 989053 - Bilateria Bilateria No
Spu-Mir-252-P1 spu-mir-252a MIR-252 UAAGUAC MIMAT0009672 None Scaffold1276 118845 118928 + Bilateria Bilateria No 1
Spu-Mir-252-P2 spu-mir-252b MIR-252 UAAGUAG MIMAT0009673 None Scaffold1276 117467 117526 + Bilateria Bilateria No
Spu-Mir-278 spu-mir-278 MIR-278 CGGUGGG MIMAT0019163 MIMAT0009674 Scaffold867 171662 171726 - Bilateria Bilateria No 1
Spu-Mir-375 spu-mir-375 MIR-375 UUGUUCG None MIMAT0009648 Scaffold1492 109248 109332 + Bilateria Bilateria No 1
Spu-Mir-2001 spu-mir-2001 MIR-2001 UGUGACC MIMAT0009740 None Scaffold1276 110932 110992 + Bilateria Bilateria No 1
Spu-Mir-2002 spu-mir-2002 MIR-2002 GAAUACA MIMAT0019165 MIMAT0009743 Scaffold39 169229 169293 - Eleutherozoa Eleutherozoa No 1 1
Spu-Mir-2004 spu-mir-2004 MIR-2004 CACACAC None MIMAT0009745 Scaffold912 124828 124892 - Eleutherozoa Eleutherozoa No 1 1
Spu-Mir-2005 spu-mir-2005 MIR-2005 GUCCAAU MIMAT0009746 None Scaffold1753 115422 115485 + Eleutherozoa Eleutherozoa Unknown 1
Spu-Mir-2006 spu-mir-2006 MIR-2006 AGCACAC None MIMAT0009747 Scaffold2497 40793 40861 - Ambulacraria Ambulacraria Yes 1
Spu-Mir-2007-P1 spu-mir-2007 MIR-2007 AUUUCAG MIMAT0009748 None Scaffold47 864778 864846 + S. purpuratus Ambulacraria No
Spu-Mir-2007-P2 None MIR-2007 AUUUCAG None None Scaffold2335 4912 4980 + S. purpuratus Ambulacraria No
Spu-Mir-2008 spu-mir-2008 MIR-2008 UAUUAAC None MIMAT0009749 Scaffold365 155001 155059 - Ambulacraria Ambulacraria No 1
Spu-Mir-2009 spu-mir-2009 MIR-2009 GAGUUGU None MIMAT0009750 Scaffold3006 37992 38052 - Ambulacraria Ambulacraria No
Spu-Mir-2010 spu-mir-2010 MIR-2010 UACUGUU None MIMAT0009751 Scaffold191 189313 189377 - Eleutherozoa Eleutherozoa No 1 1 1
Spu-Mir-2011 spu-mir-2011 MIR-2011 CAAGGUG None MIMAT0009752 Scaffold652 263024 263084 + Ambulacraria Ambulacraria No 1
Spu-Mir-2012 spu-mir-2012 MIR-2012 AGUACUG MIMAT0009741 None Scaffold111 176731 176794 + Ambulacraria Ambulacraria No 1
Spu-Mir-4847 spu-mir-4847 MIR-4847 AAUGAUG MIMAT0020069 None Scaffold387 398514 398577 + S. purpuratus S. purpuratus Unknown 1
Spu-Novel-1-P1 None SPU-NOVEL-1 CGACUUC None None Scaffold879 42084 42146 - S. purpuratus S. purpuratus No 1
Spu-Novel-1-P2 None SPU-NOVEL-1 CGACUUC None None Scaffold1061 14703 14765 - S. purpuratus S. purpuratus No 1
Spu-Novel-2 None SPU-NOVEL-2 UUUAUGA None None Scaffold299 164644 164707 - S. purpuratus S. purpuratus No 1
Spu-Novel-3 None SPU-NOVEL-3 AUAUGAU None None Scaffold299 167946 168004 - S. purpuratus S. purpuratus No 1
Spu-Novel-4 None SPU-NOVEL-4 AGAUCUA None None Scaffold904 87197 87273 - S. purpuratus S. purpuratus No
Spu-Novel-5 None SPU-NOVEL-5 GACGGUA None None Scaffold998 168355 168430 - S. purpuratus S. purpuratus No

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