MirGeneDB 2.1

107 Ciona intestinalis microRNA genes
Sort by genome coordinates Motifs Tissue expression
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MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Cin-Mir-184 cin-mir-184 MIR-184 GGACGGA None MIMAT0006108 11 4043133 4043209 - Bilateria Bilateria No 1 1
Cin-Mir-1 cin-mir-1 MIR-1 GGAAUGU MIMAT0016392 MIMAT0016393 1 8400375 8400469 + Bilateria Bilateria No 1
Cin-Mir-9 cin-mir-9 MIR-9 CUUUGGU MIMAT0016396 None 5 4897034 4897089 + Bilateria Bilateria No 1
Cin-Mir-33 cin-mir-33 MIR-33 UAAUGUG MIMAT0006093 None HT000187.1 34845 34901 - Bilateria Bilateria No 1 1
Cin-Mir-153 cin-mir-153 MIR-153 UGCAUAG MIMAT0015261 MIMAT0006104 5 1106327 1106387 + Bilateria Bilateria No
Cin-Mir-281 cin-mir-281 MIR-281 GUCAUGG MIMAT0015265 MIMAT0006114 HT000062.1 205034 205088 + Bilateria Bilateria No 1 1
Cin-Mir-34 cin-mir-34 MIR-34 GGCAGUG MIMAT0006094 MIMAT0015252 10 3230582 3230671 - Bilateria Bilateria No 1
Cin-Mir-219 cin-mir-219 MIR-219 GAUUGUC MIMAT0006113 MIMAT0015264 7 4370293 4370349 - Bilateria Bilateria Unknown 1 1
Cin-Mir-133 cin-mir-133 MIR-133 UUGGUCC MIMAT0015259 MIMAT0006102 1 8400633 8400695 + Bilateria Bilateria No 1
Cin-Mir-7 cin-mir-7 MIR-7 GGAAGAC MIMAT0006091 MIMAT0015251 1 1104842 1104894 + Bilateria Bilateria No 1
Cin-Mir-31 cin-mir-31 MIR-31 GGCAAGA MIMAT0006092 None HT000111.1 89204 89265 - Bilateria Bilateria No 1 1
Cin-Mir-375 cin-mir-375 MIR-375 UUGUUCG MIMAT0016417 MIMAT0016418 7 372868 372952 - Bilateria Bilateria No 1
Cin-Mir-96-P1 cin-mir-96 MIR-96 UUGGCAC MIMAT0016403 MIMAT0016404 HT000094.1 542651 542705 - Bilateria Bilateria No 1
Cin-Mir-96-P2 cin-mir-182 MIR-96 UUGGCAA MIMAT0016411 MIMAT0016412 HT000094.1 542170 542234 - Bilateria Bilateria No 1
Cin-Mir-10-P2 cin-mir-1473 MIR-10 CAAGCUC MIMAT0015245 MIMAT0006067 10 1023005 1023063 - Bilateria Eumetazoa No 1
Cin-Mir-29-P2 cin-mir-29 MIR-29 AGCACCA MIMAT0016401 MIMAT0016402 12 4741540 4741600 + Bilateria Bilateria No 1
Cin-Mir-96-P3 cin-mir-183 MIR-96 AUGGCAC MIMAT0006107 MIMAT0015262 HT000094.1 543640 543692 - Bilateria Bilateria No 1 1
Cin-Mir-10-P3 cin-mir-125 MIR-10 CCCUGAG MIMAT0016405 MIMAT0016406 10 1022411 1022462 - Bilateria Eumetazoa No
Cin-Mir-4057 cin-mir-4057 MIR-4057 UUGCUAC MIMAT0016603 MIMAT0016604 8 5547196 5547250 - Chordata Chordata No 1
Cin-Mir-8-P1 cin-mir-200 MIR-8 AAUACUG MIMAT0015263 MIMAT0006110 HT000325.1 8346 8403 + Chordata Bilateria No 1
Cin-Mir-8-P2 cin-mir-141 MIR-8 AACACUG MIMAT0015260 MIMAT0006103 HT000325.1 8710 8764 + Chordata Bilateria No 1 1
Cin-Mir-196 cin-mir-196 MIR-196 AGGUAGU MIMAT0016413 MIMAT0016414 7 2713377 2713429 - Olfactores Olfactores Unknown 1
Cin-Let-7-P1 cin-let-7d LET-7 GAGGUAG MIMAT0006089 MIMAT0015250 10 1022546 1022607 - Olfactores Bilateria No 1
Cin-Mir-15-P1 cin-mir-15 MIR-15 AGCAGCA MIMAT0016397 MIMAT0016398 7 3345446 3345500 - Olfactores Olfactores Yes 1
Cin-Mir-15-P2 cin-mir-4059 MIR-15 AGCAGCA MIMAT0016606 MIMAT0016607 7 3345089 3345142 - Olfactores Olfactores No 1
Cin-Mir-126-v1 cin-mir-126 MIR-126 CGUACCG MIMAT0015258 MIMAT0006101 1 5485228 5485289 - Olfactores Olfactores No 1 1
Cin-Mir-126-v2 cin-mir-126 MIR-126 GUACCGU MIMAT0015258 MIMAT0006101 1 5485228 5485289 - Olfactores Olfactores No 1 1
Cin-Mir-5600 cin-mir-5600 MIR-5600 CGAAACC MIMAT0022323 MIMAT0022324 7 1895997 1896062 - C. intestinalis C. intestinalis No 1
Cin-Mir-4040 cin-mir-4040 MIR-4040 CGUCUUU MIMAT0016569 MIMAT0016570 11 4184663 4184717 - C. intestinalis C. intestinalis No 1
Cin-Mir-4048 cin-mir-4048 MIR-4048 CACCUUG MIMAT0016585 MIMAT0016586 13 1257512 1257570 - C. intestinalis C. intestinalis No
Cin-Novel-1 None CIN-NOVEL-1 AGGCAGC None None HT001221.1 6546 6600 - C. intestinalis C. intestinalis No 1
Cin-Mir-1497 cin-mir-1497 MIR-1497 UGAAGAA MIMAT0015246 MIMAT0006068 9 5852709 5852773 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4065 cin-mir-4065 MIR-4065 AUCGACA MIMAT0016618 MIMAT0016619 1 4176956 4177027 - C. intestinalis C. intestinalis No 1 1
Cin-Mir-4073 cin-mir-4073 MIR-4073 AGGAUGU MIMAT0016634 MIMAT0016635 HT000823.1 87062 87115 + C. intestinalis C. intestinalis No 1
Cin-Mir-4081 cin-mir-4081 MIR-4081 AGUUCAA MIMAT0016651 MIMAT0016652 2 6103234 6103286 - C. intestinalis C. intestinalis No 1
Cin-Mir-4034 cin-mir-4034 MIR-4034 CACAGUG MIMAT0016557 MIMAT0016558 14 3281763 3281819 - C. intestinalis C. intestinalis No
Cin-Mir-4050 cin-mir-4050 MIR-4050 AGGUAAA MIMAT0016589 MIMAT0016590 5 3019437 3019494 - C. intestinalis C. intestinalis No 1
Cin-Mir-4043 cin-mir-4043 MIR-4043 UGCAUAG MIMAT0016575 MIMAT0016576 14 1118678 1118734 - C. intestinalis C. intestinalis No 1 1
Cin-Mir-4067 cin-mir-4067 MIR-4067 AAGGAAC MIMAT0016622 MIMAT0016623 1 1240455 1240513 + C. intestinalis C. intestinalis No 1
Cin-Mir-4036 cin-mir-4036 MIR-4036 GUGCAAA MIMAT0016561 MIMAT0016562 HT000034.1 635404 635456 + C. intestinalis C. intestinalis No 1
Cin-Mir-4044 cin-mir-4044 MIR-4044 GAAAUAG MIMAT0016577 MIMAT0016578 HT000127.1 131957 132015 - C. intestinalis C. intestinalis No 1 1
Cin-Mir-4052 cin-mir-4052 MIR-4052 CACUUGA MIMAT0016593 MIMAT0016594 HT001175.1 12120 12173 - C. intestinalis C. intestinalis No 1
Cin-Mir-4060 cin-mir-4060 MIR-4060 UUUCACU MIMAT0016608 MIMAT0016609 HT000174.1 91188 91245 + C. intestinalis C. intestinalis No 1
Cin-Mir-4076 cin-mir-4076 MIR-4076 AACGAGU MIMAT0016640 MIMAT0016641 1 3976074 3976131 + C. intestinalis C. intestinalis No 1
Cin-Mir-4029 cin-mir-4029 MIR-4029 AAGUGCA MIMAT0016547 MIMAT0016548 14 3195082 3195137 - C. intestinalis C. intestinalis No 1
Cin-Mir-4037 cin-mir-4037 MIR-4037 CAAUUGC MIMAT0016563 MIMAT0016564 HT001175.1 12218 12275 - C. intestinalis C. intestinalis No 1
Cin-Mir-4045 cin-mir-4045 MIR-4045 CACAAUG MIMAT0016579 MIMAT0016580 HT000105.1 43955 44009 + C. intestinalis C. intestinalis No 1
Cin-Mir-4053 cin-mir-4053 MIR-4053 AGUACGU MIMAT0016595 MIMAT0016596 HT000098.1 146779 146840 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4061 cin-mir-4061 MIR-4061 ACACUCU MIMAT0016610 MIMAT0016611 HT001175.1 12325 12379 - C. intestinalis C. intestinalis No 1
Cin-Mir-4085 cin-mir-4085 MIR-4085 CGCACGU MIMAT0016659 MIMAT0016660 5 663501 663559 + C. intestinalis C. intestinalis No 1
Cin-Mir-4093 cin-mir-4093 MIR-4093 UGCAACA MIMAT0016672 MIMAT0016673 1 3128495 3128562 + C. intestinalis C. intestinalis No 1
Cin-Mir-3598 cin-mir-3598 MIR-3598 CACAGUG MIMAT0016399 MIMAT0016400 14 3281620 3281678 - C. intestinalis C. intestinalis No 1
Cin-Mir-4030 cin-mir-4030 MIR-4030 AAGUGCA MIMAT0016549 MIMAT0016550 3 4477480 4477534 - C. intestinalis C. intestinalis No 1
Cin-Mir-4046 cin-mir-4046 MIR-4046 CAGUAAC MIMAT0016581 MIMAT0016582 HT000823.1 87428 87487 + C. intestinalis C. intestinalis No 1
Cin-Mir-4054 cin-mir-4054 MIR-4054 AUGAUUG MIMAT0016597 MIMAT0016598 10 3226199 3226256 - C. intestinalis C. intestinalis No 1
Cin-Mir-4070 cin-mir-4070 MIR-4070 CGAAUGU MIMAT0016628 MIMAT0016629 5 662540 662600 + C. intestinalis C. intestinalis No 1
Cin-Mir-4078 cin-mir-4078 MIR-4078 UCACUUU MIMAT0016645 MIMAT0016646 HT000174.1 91084 91136 + C. intestinalis C. intestinalis No 1
Cin-Mir-4086 cin-mir-4086 MIR-4086 AUUUUGA None MIMAT0016661 5 662410 662467 + C. intestinalis C. intestinalis No
Cin-Mir-4127 cin-mir-4127 MIR-4127 ACAGCUC MIMAT0016721 MIMAT0016722 5 2473269 2473324 + C. intestinalis C. intestinalis No 1 1 1
Cin-Mir-1495 None MIR-1495 GUGUAAU None None 6 607126 607179 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4031 cin-mir-4031 MIR-4031 CAUGUAC MIMAT0016551 MIMAT0016552 HT000052.1 65613 65668 - C. intestinalis C. intestinalis No 1
Cin-Mir-4047 cin-mir-4047 MIR-4047 CAGACAC MIMAT0016583 MIMAT0016584 1 4157238 4157294 - C. intestinalis C. intestinalis No 1 1
Cin-Mir-4055 cin-mir-4055 MIR-4055 AUUCGGA MIMAT0016599 MIMAT0016600 7 633871 633928 - C. intestinalis C. intestinalis No 1
Cin-Mir-4063 cin-mir-4063 MIR-4063 ACACCUU MIMAT0016614 MIMAT0016615 13 1256492 1256550 - C. intestinalis C. intestinalis No 1 1
Cin-Mir-4071 cin-mir-4071 MIR-4071 UUGCUCU MIMAT0016630 MIMAT0016631 9 4379240 4379291 - C. intestinalis C. intestinalis No 1
Cin-Mir-4079 cin-mir-4079 MIR-4079 GCUUCAU MIMAT0016647 MIMAT0016648 7 634173 634224 - C. intestinalis C. intestinalis No 1
Cin-Mir-4017-P1 cin-mir-4033 MIR-4017 AAGUGCA MIMAT0016555 MIMAT0016556 HT000042.1 67380 67435 + C. intestinalis C. intestinalis No 1
Cin-Mir-4010-P1 cin-mir-4010 MIR-4010 ACGUAUG None MIMAT0016507 3 3427170 3427233 + C. intestinalis C. intestinalis No 1
Cin-Mir-4018-P1 cin-mir-4018a MIR-4018 GGAACAU MIMAT0016528 MIMAT0016529 3 568964 569018 + C. intestinalis C. intestinalis No 1
Cin-Mir-4011-P1 cin-mir-4011a MIR-4011 ACAGUGG MIMAT0016508 MIMAT0016509 HT000276.1 10121 10182 - C. intestinalis C. intestinalis No 1
Cin-Mir-4013-P1 cin-mir-4013a MIR-4013 GACUUGU MIMAT0016514 MIMAT0016515 HT000174.1 447280 447335 - C. intestinalis C. intestinalis No 1
Cin-Mir-1502-P1 cin-mir-1502d MIR-1502 GAACUUU MIMAT0016493 MIMAT0016494 3 568849 568908 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4014-P1 cin-mir-4014-2 MIR-4014 UACAGAA MIMAT0016976 MIMAT0016519 12 3135494 3135548 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4062-P1 cin-mir-4068 MIR-4062 AUGCUGA MIMAT0016624 MIMAT0016625 5 996178 996244 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4015-P1 cin-mir-4015-2 MIR-4015 GAUAGGU MIMAT0016520 MIMAT0016521 HT000065.1 63426 63477 + C. intestinalis C. intestinalis No 1 1 1
Cin-Mir-4010-P2 cin-mir-4010 MIR-4010 ACGUAUG None MIMAT0016507 3 3427170 3427233 + C. intestinalis C. intestinalis No 1
Cin-Mir-4018-P2 cin-mir-4018b MIR-4018 GGAACAU MIMAT0016530 MIMAT0016531 3 569570 569648 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4011-P2 cin-mir-4011b MIR-4011 CACAGUG MIMAT0016510 MIMAT0016511 HT000354.1 4673 4729 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4013-P2 cin-mir-4013b MIR-4013 AGGCUGC MIMAT0016516 MIMAT0016517 HT000174.1 385914 385966 + C. intestinalis C. intestinalis No 1
Cin-Mir-1502-P2 cin-mir-1502b MIR-1502 GAACUUU MIMAT0016489 MIMAT0016490 3 569083 569140 + C. intestinalis C. intestinalis No 1
Cin-Mir-4014-P2 cin-mir-4014-1 MIR-4014 UACAGAA MIMAT0016518 MIMAT0016519 12 3135786 3135842 + C. intestinalis C. intestinalis No 1
Cin-Mir-4062-P2 cin-mir-4062 MIR-4062 AUGCUGU MIMAT0016612 MIMAT0016613 5 996382 996447 + C. intestinalis C. intestinalis No 1
Cin-Mir-4015-P2 cin-mir-4015-1 MIR-4015 GAUAGGU MIMAT0016520 MIMAT0016521 HT000065.1 63426 63477 + C. intestinalis C. intestinalis No 1 1 1
Cin-Mir-1502-P3 cin-mir-1502a MIR-1502 UGAACUU MIMAT0016487 MIMAT0016488 3 569197 569256 + C. intestinalis C. intestinalis No 1
Cin-Mir-1502-P4 cin-mir-1502c MIR-1502 GAACUUU MIMAT0016491 MIMAT0016492 3 570975 571033 + C. intestinalis C. intestinalis No 1
Cin-Mir-92-o69 cin-mir-92b MIR-92 AUUGCAC MIMAT0015254 MIMAT0006097 1 1925379 1925436 + C. intestinalis Bilateria No 1
Cin-Mir-92-o70 cin-mir-92e MIR-92 AUUGCAC MIMAT0016421 MIMAT0016422 1 1925679 1925732 + C. intestinalis Bilateria No 1
Cin-Mir-92-o71 cin-mir-4038 MIR-92 AUUGCAC MIMAT0016565 MIMAT0016566 1 1926125 1926182 + C. intestinalis Bilateria No
Cin-Mir-124-P7 cin-mir-124-2 MIR-124 AAGGCAC MIMAT0015257 MIMAT0006100 7 4969845 4969902 - C. intestinalis Bilateria No 1 1
Cin-Mir-135-P7 cin-mir-132-2 MIR-135 AUGGCUU MIMAT0016425 None HT000116.1 70787 70845 + C. intestinalis Chordata No 1 1
Cin-Mir-92-o72 cin-mir-92a MIR-92 AUUGCAC MIMAT0015253 MIMAT0006096 3 884650 884701 + C. intestinalis Bilateria No 1
Cin-Mir-124-P8 cin-mir-124-1 MIR-124 AAGGCAC MIMAT0015256 MIMAT0006100 7 4969705 4969762 - C. intestinalis Bilateria No 1 1
Cin-Mir-135-P8 cin-mir-135 MIR-135 AUGGCUU MIMAT0016409 MIMAT0016410 HT000116.1 71231 71286 + C. intestinalis Chordata No 1
Cin-Mir-92-o73 cin-mir-92d MIR-92 AUUGCAC MIMAT0016423 MIMAT0016424 3 884985 885041 + C. intestinalis Bilateria No 1
Cin-Mir-92-o74 cin-mir-92c MIR-92 AUUGCAC MIMAT0015255 MIMAT0006098 3 885439 885494 + C. intestinalis Bilateria No 1
Cin-Mir-92-o75 cin-mir-367 MIR-92 AUUGCAC MIMAT0016415 MIMAT0016416 HT000037.1 5191 5250 - C. intestinalis Bilateria No 1
Cin-Mir-92-o76 cin-mir-4009c MIR-92 AUUGCAC None MIMAT0016505 HT000037.1 5092 5146 - C. intestinalis Bilateria No 1 1
Cin-Mir-92-o77 cin-mir-4009a MIR-92 AUUGCAC MIMAT0016501 MIMAT0016502 HT000037.1 4978 5031 - C. intestinalis Bilateria No
Cin-Mir-92-o78 cin-mir-4009b MIR-92 AUUGCAC MIMAT0016503 MIMAT0016504 HT000037.1 4884 4935 - C. intestinalis Bilateria No 1
Cin-Mir-4017-P2a cin-mir-4017-1 MIR-4017 AAGUGCA MIMAT0016524 MIMAT0016525 HT000042.1 68643 68699 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4017-P2b cin-mir-4017-2 MIR-4017 AAGUGCA MIMAT0016524 MIMAT0016525 HT000042.1 68643 68699 + C. intestinalis C. intestinalis No 1 1
Cin-Let-7-P2o2 cin-let-7f LET-7 GAGGUAG MIMAT0016842 MIMAT0016843 4 2157552 2157624 + C. intestinalis Bilateria Yes 1
Cin-Let-7-P2o3 cin-let-7b LET-7 UGAGGUA MIMAT0006087 MIMAT0015249 4 2157948 2158018 + C. intestinalis Bilateria Yes 1
Cin-Let-7-P2o4 cin-let-7c LET-7 GAGGUAG MIMAT0006088 None 4 2158141 2158206 + C. intestinalis Bilateria Yes 1
Cin-Let-7-P2o5 cin-let-7a-2 LET-7 GAGGUAG MIMAT0006086 MIMAT0015248 4 2158340 2158414 + C. intestinalis Bilateria Yes 1
Cin-Let-7-P2o1-v1 cin-let-7a-1 LET-7 UGAGGUA MIMAT0006086 MIMAT0015247 4 2157421 2157502 + C. intestinalis Bilateria Yes 1 1
Cin-Let-7-P2o1-v2 cin-let-7a-1 LET-7 GAGGUAG MIMAT0006086 MIMAT0015247 4 2157422 2157502 + C. intestinalis Bilateria Yes 1

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