MirGeneDB

151 Crassostrea gigas microRNA genes
Sort by genome coordinates Motifs Tissue expression
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MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Cgi-Bantam None BANTAM GAGAUCA None None scaffold950 540423 540481 + Protostomia Protostomia No
Cgi-Let-7 None LET-7 GAGGUAG None None scaffold43364 47259 47329 - Bilateria Bilateria No 1
Cgi-Mir-1 None MIR-1 GGAAUGU None None scaffold1174 365483 365546 + Bilateria Bilateria No 1 1
Cgi-Mir-2-o28 None MIR-2 AUCACAG None None scaffold1503 13873 13931 - C. gigas Protostomia No 1 1
Cgi-Mir-2-o29 None MIR-2 AUCACAG None None scaffold1503 15162 15221 - C. gigas Protostomia No 1
Cgi-Mir-2-o30 None MIR-2 CACAGCC None None scaffold602 445001 445057 + C. gigas Protostomia No 1
Cgi-Mir-2-o31 None MIR-2 AUCACAG None None scaffold602 445140 445196 + C. gigas Protostomia No 1
Cgi-Mir-2-o32 None MIR-2 AUCACAG None None scaffold602 445414 445474 + C. gigas Protostomia No 1
Cgi-Mir-2-o33 None MIR-2 AUCACAG None None scaffold602 445843 445901 + C. gigas Protostomia No
Cgi-Mir-2-o34 None MIR-2 AUCACAG None None scaffold602 446019 446076 + C. gigas Protostomia No 1
Cgi-Mir-2-o35 None MIR-2 AUCACAG None None scaffold602 446534 446592 + C. gigas Protostomia No 1 1
Cgi-Mir-7 None MIR-7 GGAAGAC None None scaffold1896 30954 31015 + Bilateria Bilateria No 1
Cgi-Mir-8 None MIR-8 AAUACUG None None scaffold198 1115302 1115361 - Bilateria Bilateria No 1
Cgi-Mir-9-P12 None MIR-9 CUUUGGU None None scaffold42448 83582 83643 - C. gigas Bilateria No 1
Cgi-Mir-9-P13 None MIR-9 CUUUGGU None None scaffold42448 84463 84524 - C. gigas Bilateria No 1
Cgi-Mir-9-P14 None MIR-9 CUUUGGU None None scaffold42448 85409 85470 - C. gigas Bilateria No 1
Cgi-Mir-10-P1 None MIR-10 ACCCUGU None None scaffold801 461650 461709 - Bilateria Eumetazoa No
Cgi-Mir-10-P2 None MIR-10 ACCCGUA None None scaffold43364 47989 48043 - Bilateria Eumetazoa No
Cgi-Mir-10-P3 None MIR-10 CCCUGAG None None scaffold43364 40021 40072 - Bilateria Eumetazoa No 1
Cgi-Mir-10-P5 None MIR-10 UACCCUG None None scaffold145 700580 700637 + Lophotrochozoa Eumetazoa No 1
Cgi-Mir-10-P6 None MIR-10 UUACCCU None None scaffold1179 770393 770460 + Lophotrochozoa Eumetazoa No 1
Cgi-Mir-12 None MIR-12 GAGUAUU None None scaffold1785 68054 68110 - Protostomia Protostomia No 1
Cgi-Mir-22-P1 None MIR-22 GCUGCCU None None scaffold726 82804 82861 - Bilateria Bilateria No 1 1
Cgi-Mir-22-P2 None MIR-22 AGCUGCC None None scaffold726 81942 82005 - Bilateria Bilateria No 1
Cgi-Mir-29-P1 None MIR-29 AGCACCA None None scaffold145 188912 188969 + Bilateria Bilateria No 1
Cgi-Mir-29-P2 None MIR-29 AGCACCA None None scaffold145 184799 184863 + Bilateria Bilateria No
Cgi-Mir-31 None MIR-31 GGCAAGA None None scaffold211 287343 287398 - Bilateria Bilateria No 1
Cgi-Mir-33 None MIR-33 UGCAUUG None None scaffold40442 43816 43873 - Bilateria Bilateria No 1
Cgi-Mir-34 None MIR-34 GGCAGUG None None scaffold622 474792 474856 + Bilateria Bilateria No 1
Cgi-Mir-36 None MIR-36 CACCGGG None None scaffold43988 9126 9185 - Protostomia Protostomia No 1
Cgi-Mir-67-P4 None MIR-67 CACAACC None None scaffold146 102638 102698 + C. gigas Protostomia No 1
Cgi-Mir-67-P5 None MIR-67 CACAACC None None scaffold226 224596 224654 - C. gigas Protostomia No 1 1
Cgi-Mir-67-P6 None MIR-67 ACAACCU None None scaffold146 102295 102351 + C. gigas Protostomia No 1 1
Cgi-Mir-71 None MIR-71 GAAAGAC None None scaffold602 444840 444896 + Bilateria Bilateria No 1 1
Cgi-Mir-76 None MIR-76 UCGUUGU None None scaffold547 522573 522634 + Bilateria Bilateria No 1
Cgi-Mir-87-o7 None MIR-87 UGAGCAA None None scaffold1600 144750 144808 + C. gigas Protostomia No 1
Cgi-Mir-87-o8 None MIR-87 UGAGCAA None None scaffold1600 146061 146122 + C. gigas Protostomia No 1
Cgi-Mir-92-o31 None MIR-92 AUUGCAC None None C33654 9471 9530 + C. gigas Bilateria No 1 1
Cgi-Mir-92-o32 None MIR-92 AUUGCAC None None scaffold459 310883 310941 - C. gigas Bilateria No 1 1
Cgi-Mir-92-o33 None MIR-92 AUUGCAC None None scaffold459 311201 311262 - C. gigas Bilateria No 1
Cgi-Mir-92-o34 None MIR-92 AUUGCAC None None scaffold459 320194 320253 - C. gigas Bilateria No 1 1
Cgi-Mir-96-P1a None MIR-96 UUGGCAC None None scaffold591 1189388 1189446 - Mollusca Bilateria No 1 1
Cgi-Mir-96-P1b None MIR-96 UUUGGCA None None scaffold77 200772 200830 + Mollusca Bilateria No 1
Cgi-Mir-96-P2h None MIR-96 UUGGCAC None None scaffold626 26567 26631 + C. gigas Bilateria No 1
Cgi-Mir-96-P2i None MIR-96 UUGGCAC None None scaffold42648 4758 4816 + C. gigas Bilateria No 1
Cgi-Mir-96-P3 None MIR-96 AUGGCAC None None scaffold626 18351 18408 + Bilateria Bilateria No 1
Cgi-Mir-124-P12 None MIR-124 AAGGCAC None None scaffold427 142710 142766 + C. gigas Bilateria No 1
Cgi-Mir-124-P13 None MIR-124 AAGGCAC None None scaffold427 141060 141116 + C. gigas Bilateria No 1
Cgi-Mir-133-v1 None MIR-133 UGGUCCC None None scaffold1174 373458 373520 + Bilateria Bilateria No 1
Cgi-Mir-133-v2 None MIR-133 UUGGUCC None None scaffold1174 373458 373520 + Bilateria Bilateria No 1
Cgi-Mir-137 None MIR-137 UAUUGCU None None scaffold72 265491 265544 + Bilateria Bilateria No 1
Cgi-Mir-153 None MIR-153 UGCAUAG None None scaffold586 430269 430326 + Bilateria Bilateria No 1
Cgi-Mir-184-P7 None MIR-184 GGACGGA None None scaffold1832 85298 85356 - C. gigas Bilateria No 1
Cgi-Mir-184-P8a None MIR-184 GGACGGA None None scaffold43150 62920 62976 - C. gigas Bilateria No
Cgi-Mir-184-P8b None MIR-184 GGACGGA None None scaffold121 721341 721398 - C. gigas Bilateria No
Cgi-Mir-184-P8c None MIR-184 GGACGGA None None scaffold121 721728 721785 - C. gigas Bilateria No
Cgi-Mir-184-P8d None MIR-184 GGACGGA None None scaffold43150 66305 66362 - C. gigas Bilateria No 1
Cgi-Mir-184-P9 None MIR-184 CUUGUCA None None scaffold121 720703 720760 - C. gigas Bilateria No 1
Cgi-Mir-184-P10 None MIR-184 GGACGGA None None scaffold43150 66053 66110 - C. gigas Bilateria No 1
Cgi-Mir-184-P11 None MIR-184 GGACGGA None None scaffold121 721087 721144 - C. gigas Bilateria No 1
Cgi-Mir-184-P12 None MIR-184 UUGUCAC None None scaffold121 718786 718841 - C. gigas Bilateria No
Cgi-Mir-184-P13a None MIR-184 CUUGUCA None None scaffold43150 67584 67641 - C. gigas Bilateria No 1
Cgi-Mir-184-P13b None MIR-184 GGACGGA None None scaffold43150 66456 66512 - C. gigas Bilateria No 1
Cgi-Mir-184-P14 None MIR-184 GGACGGA None None scaffold43150 66584 66641 - C. gigas Bilateria No 1
Cgi-Mir-184-P15a1 None MIR-184 GGACGGA None None scaffold121 718149 718206 - C. gigas Bilateria No 1
Cgi-Mir-184-P15a2 None MIR-184 GGACGGA None None scaffold121 719424 719481 - C. gigas Bilateria No 1
Cgi-Mir-184-P15a3 None MIR-184 GGACGGA None None scaffold121 720319 720376 - C. gigas Bilateria No 1
Cgi-Mir-184-P15a4 None MIR-184 GGACGGA None None scaffold121 721600 721657 - C. gigas Bilateria No 1
Cgi-Mir-184-P15a5 None MIR-184 GGACGGA None None scaffold121 721856 721913 - C. gigas Bilateria No 1
Cgi-Mir-184-P15a6 None MIR-184 GGACGGA None None scaffold121 722115 722172 - C. gigas Bilateria No
Cgi-Mir-184-P15a7 None MIR-184 GGACGGA None None scaffold121 722371 722428 - C. gigas Bilateria No 1
Cgi-Mir-184-P15b None MIR-184 GGACGGA None None scaffold121 721987 722044 - C. gigas Bilateria No 1
Cgi-Mir-184-P15c None MIR-184 GGACGGA None None scaffold121 718530 718587 - C. gigas Bilateria No 1
Cgi-Mir-184-P15d None MIR-184 GGACGGA None None scaffold121 718658 718715 - C. gigas Bilateria No
Cgi-Mir-184-P15e1 None MIR-184 GGACGGA None None scaffold121 718275 718332 - C. gigas Bilateria No 1
Cgi-Mir-184-P15e2 None MIR-184 GGACGGA None None scaffold121 718401 718458 - C. gigas Bilateria No 1
Cgi-Mir-184-P15e3 None MIR-184 GGACGGA None None scaffold121 720447 720504 - C. gigas Bilateria No 1
Cgi-Mir-184-P15f None MIR-184 GGACGGA None None scaffold121 719552 719609 - C. gigas Bilateria No 1
Cgi-Mir-184-P15g1 None MIR-184 GGACGGA None None scaffold121 719041 719098 - C. gigas Bilateria No 1
Cgi-Mir-184-P15g2 None MIR-184 GGACGGA None None scaffold121 719169 719226 - C. gigas Bilateria No 1
Cgi-Mir-184-P15g3 None MIR-184 GGACGGA None None scaffold121 719297 719354 - C. gigas Bilateria No 1
Cgi-Mir-184-P15h None MIR-184 GGACGGA None None scaffold121 720192 720249 - C. gigas Bilateria No 1
Cgi-Mir-184-P15i None MIR-184 GGACGGA None None scaffold121 721214 721271 - C. gigas Bilateria No 1
Cgi-Mir-184-P15j None MIR-184 GGACGGA None None scaffold121 720064 720121 - C. gigas Bilateria No 1
Cgi-Mir-184-P15k None MIR-184 GGACGGA None None scaffold121 721469 721526 - C. gigas Bilateria No 1
Cgi-Mir-184-P15l1 None MIR-184 GGACGGA None None scaffold121 719680 719737 - C. gigas Bilateria No 1
Cgi-Mir-184-P15l2 None MIR-184 GGACGGA None None scaffold121 720575 720632 - C. gigas Bilateria No 1
Cgi-Mir-184-P15m None MIR-184 GGACGGA None None scaffold121 718913 718970 - C. gigas Bilateria No
Cgi-Mir-184-P15n None MIR-184 GGACGGA None None scaffold43150 63749 63806 - C. gigas Bilateria No
Cgi-Mir-184-P15o None MIR-184 GGACGGA None None scaffold43150 64048 64105 - C. gigas Bilateria No 1
Cgi-Mir-184-P15p None MIR-184 GGACGGA None None scaffold43150 65310 65367 - C. gigas Bilateria No 1
Cgi-Mir-184-P15q None MIR-184 GGACGGA None None scaffold43150 66926 66983 - C. gigas Bilateria No 1
Cgi-Mir-184-P15r None MIR-184 GGACGGA None None scaffold43150 67056 67113 - C. gigas Bilateria No 1
Cgi-Mir-184-P15s None MIR-184 GGACGGA None None scaffold43150 63192 63248 - C. gigas Bilateria No 1
Cgi-Mir-184-P15t None MIR-184 GGACGGA None None scaffold43150 63471 63527 - C. gigas Bilateria No 1
Cgi-Mir-184-P15u None MIR-184 GGACGGA None None scaffold43150 64385 64441 - C. gigas Bilateria No 1
Cgi-Mir-190 None MIR-190 GAUAUGU None None scaffold37128 4976 5037 + Bilateria Bilateria No 1
Cgi-Mir-193-P1 None MIR-193 ACUGGCC None None scaffold1144 321631 321689 + Bilateria Bilateria No 1
Cgi-Mir-193-P2 None MIR-193 AAUGCCC None None scaffold1144 349158 349216 + Bilateria Bilateria No 1
Cgi-Mir-210 None MIR-210 UGUGCGU None None scaffold40380 66535 66590 - Bilateria Bilateria No 1 1 1
Cgi-Mir-216-P1 None MIR-216 AAUCUCA None None scaffold1785 68810 68867 - Bilateria Bilateria No 1 1
Cgi-Mir-216-P2 None MIR-216 AAUAUCA None None scaffold1785 69359 69417 - Bilateria Bilateria No
Cgi-Mir-219 None MIR-219 GAACUGU None None scaffold517 74689 74747 + Bilateria Bilateria No
Cgi-Mir-242 None MIR-242 UGCGUAG None None scaffold507 280160 280218 + Bilateria Bilateria No 1
Cgi-Mir-252-P1 None MIR-252 UAAGUAC None None scaffold1366 106402 106459 + Bilateria Bilateria No 1
Cgi-Mir-252-P2 None MIR-252 UAAGUAG None None scaffold1366 96960 97021 + Bilateria Bilateria No
Cgi-Mir-277 None MIR-277 AAAUGCA None None scaffold622 474084 474142 + Protostomia Protostomia No 1
Cgi-Mir-278 None MIR-278 CGGUGGG None None scaffold1867 73516 73574 + Bilateria Bilateria No 1
Cgi-Mir-279 None MIR-279 GACUAGA None None scaffold43988 13126 13181 - Protostomia Protostomia No 1 1
Cgi-Mir-281 None MIR-281 GUCAUGG None None scaffold678 1138602 1138658 - Bilateria Bilateria No 1
Cgi-Mir-315-v1 None MIR-315 UUUGAUU None None scaffold626 79859 79920 - Bilateria Bilateria No 1
Cgi-Mir-315-v2 None MIR-315 UUGAUUG None None scaffold626 79860 79919 - Bilateria Bilateria No
Cgi-Mir-317-P1 None MIR-317 GAACACA None None scaffold622 468076 468134 + C. gigas Protostomia No 1
Cgi-Mir-317-P2 None MIR-317 GAACACA None None scaffold622 468583 468640 + C. gigas Protostomia No 1
Cgi-Mir-375-P3 None MIR-375 UUGUUCA None None scaffold527 290181 290238 + C. gigas Bilateria No 1
Cgi-Mir-375-P4 None MIR-375 UUGUUCA None None scaffold527 289953 290015 + C. gigas Bilateria No 1 1
Cgi-Mir-750 None MIR-750 CAGAUCU None None scaffold514 103030 103087 - Protostomia Protostomia No 1
Cgi-Mir-1175 None MIR-1175 GAGAUUC None None scaffold514 99890 99948 - Protostomia Protostomia No 1
Cgi-Mir-1984 None MIR-1984 GCCCUAU None None scaffold339 59463 59521 + Mollusca Mollusca No 1
Cgi-Mir-1985 None MIR-1985 GCCAUUU None None scaffold339 60097 60155 + Mollusca Mollusca No 1 1
Cgi-Mir-1986 None MIR-1986 GGAUUUC None None scaffold264 41066 41123 + Lophotrochozoa Lophotrochozoa No 1 1
Cgi-Mir-1989 None MIR-1989 CAGCUGU None None scaffold593 350245 350303 - Lophotrochozoa Lophotrochozoa No 1 1
Cgi-Mir-1990 None MIR-1990 GGGACUA None None scaffold264 40660 40717 + Lophotrochozoa Lophotrochozoa No 1 1
Cgi-Mir-1992 None MIR-1992 CAGCAGU None None scaffold43940 216503 216560 - Lophotrochozoa Lophotrochozoa No
Cgi-Mir-1993 None MIR-1993 AUUAUGC None None scaffold506 136468 136528 + Protostomia Protostomia No 1
Cgi-Mir-1994-P1 None MIR-1994 GAGACAG None None scaffold950 63993 64049 - Mollusca Lophotrochozoa No 1
Cgi-Mir-1994-P2 None MIR-1994 GAGACAG None None scaffold950 63808 63866 - Mollusca Lophotrochozoa No 1 1
Cgi-Mir-2001 None MIR-2001 UUGUGAC None None scaffold1366 96730 96790 + Bilateria Bilateria No
Cgi-Mir-2722 None MIR-2722 AAGGUGU None None scaffold1347 252941 252998 + Mollusca Mollusca No 1
Cgi-Novel-1 None CGI-NOVEL-1 GGCGAGC None None scaffold960 301290 301359 + C. gigas C. gigas Yes
Cgi-Novel-2 None CGI-NOVEL-2 UUGUAGA None None scaffold258 167543 167599 + C. gigas C. gigas No 1
Cgi-Novel-3 None CGI-NOVEL-3 GAGCUCA None None scaffold1094 247350 247410 + C. gigas C. gigas Yes 1
Cgi-Novel-4 None CGI-NOVEL-4 GACUUCC None None C31910 2181 2242 - C. gigas C. gigas No
Cgi-Novel-5 None CGI-NOVEL-5 GUGCUAG None None scaffold1350 173044 173100 - C. gigas C. gigas No 1
Cgi-Novel-6 None CGI-NOVEL-6 AGUGCAG None None scaffold1423 803499 803557 + C. gigas C. gigas No 1 1
Cgi-Novel-7 None CGI-NOVEL-7 GACCACG None None scaffold1497 36477 36535 + C. gigas C. gigas No
Cgi-Novel-8 None CGI-NOVEL-8 GUGCAAA None None scaffold1503 8643 8701 - C. gigas C. gigas No
Cgi-Novel-9 None CGI-NOVEL-9 UUGCCGG None None scaffold1600 297511 297569 - C. gigas C. gigas No 1
Cgi-Novel-10 None CGI-NOVEL-10 CAUACAA None None scaffold1742 63371 63430 + C. gigas C. gigas No
Cgi-Novel-11 None CGI-NOVEL-11 UGGUAAU None None scaffold1806 144396 144454 - C. gigas C. gigas No 1 1
Cgi-Novel-12 None CGI-NOVEL-12 UUUCCAU None None scaffold1873 110434 110493 - C. gigas C. gigas No
Cgi-Novel-13 None CGI-NOVEL-13 UCAUAAA None None scaffold347 454617 454675 + C. gigas C. gigas No
Cgi-Novel-14 None CGI-NOVEL-14 GCACCAA None None scaffold370 643284 643343 + C. gigas C. gigas No 1
Cgi-Novel-15 None CGI-NOVEL-15 CCAUAUU None None scaffold41304 14671 14729 + C. gigas C. gigas No 1 1
Cgi-Novel-16 None CGI-NOVEL-16 UUGGCAC None None scaffold42648 4758 4816 + C. gigas C. gigas No 1
Cgi-Novel-17 None CGI-NOVEL-17 AAGCACC None None scaffold43038 99752 99842 + C. gigas C. gigas No 1
Cgi-Novel-18 None CGI-NOVEL-18 UUGUACU None None scaffold962 82652 82754 - C. gigas C. gigas No
Cgi-Novel-19 None CGI-NOVEL-19 GCUAUAA None None scaffold631 283594 283651 - C. gigas C. gigas No
Cgi-Novel-20 None CGI-NOVEL-20 GUGGUGC None None scaffold43364 108910 108968 + C. gigas C. gigas No 1 1
Cgi-Novel-21 None CGI-NOVEL-21 AGCAGAU None None scaffold63 434587 434644 + C. gigas C. gigas No
Cgi-Novel-22 None CGI-NOVEL-22 GGUUAAG None None scaffold705 16090 16154 + C. gigas C. gigas No

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Get genome coordinates (GFF format)