MirGeneDB 2.1
120 microRNA genes with seed UUGGCAC
Sort by genome coordinates Motifs
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Ami-Mir-96-P1 ami-mir-96 MIR-96 UUGGCAC MIMAT0038106 MIMAT0038107 NW_017709854.1 28194128 28194191 + Bilateria Bilateria No 1
Bfl-Mir-96-P1 bfl-mir-96 MIR-96 UUGGCAC MIMAT0009480 MIMAT0019144 NC_049983.1 18505918 18505977 + Bilateria Bilateria No
Bla-Mir-96-P1 None MIR-96 UUGGCAC None None Sc0000043 397228 397287 - Bilateria Bilateria No
Bta-Mir-96-P1 bta-mir-96 MIR-96 UUGGCAC MIMAT0009388 None NC_037331.1 93595936 93595999 - Bilateria Bilateria No 1 1
Cfa-Mir-96-P1 cfa-mir-96 MIR-96 UUGGCAC MIMAT0009861 None chr14 7068767 7068830 + Bilateria Bilateria No 1 1
Cin-Mir-96-P1 cin-mir-96 MIR-96 UUGGCAC MIMAT0016403 MIMAT0016404 HT000094.1 542651 542705 - Bilateria Bilateria No 1
Cli-Mir-96-P1 cli-mir-96 MIR-96 UUGGCAC MIMAT0038476 MIMAT0038477 scaffold121 1261712 1261775 + Bilateria Bilateria No
Cmi-Mir-96-P1 None MIR-96 UUGGCAC None None KI635871.1 2247622 2247685 + Bilateria Bilateria No 1
Cpi-Mir-96-P1 cpi-mir-96 MIR-96 UUGGCAC MIMAT0037707 None JH584440 1633482 1633545 + Bilateria Bilateria Unknown
Cpo-Mir-96-P1 cpo-mir-96 MIR-96 UUGGCAC MIMAT0046937 MIMAT0046938 scaffold_11 50142184 50142247 - Bilateria Bilateria Unknown 1 1
Cte-Mir-96-P1 cte-mir-96 MIR-96 UUGGCAC MIMAT0009523 None CAPTEscaffold_181 4334 4396 + Bilateria Bilateria Unknown 1 1
Dno-Mir-96-P1 dno-mir-96 MIR-96 UUGGCAC MIMAT0047590 MIMAT0047591 JH568910 1128922 1128985 - Bilateria Bilateria No 1 1
Efe-Mir-96-P1 None MIR-96 UUGGCAC None None Efet.01.1657145 293 352 + Bilateria Bilateria Unknown
Ete-Mir-96-P1 None MIR-96 UUGGCAC None None JH980321 22675133 22675196 - Bilateria Bilateria No 1 1
Gga-Mir-96-P1 gga-mir-96 MIR-96 UUGGCAC MIMAT0037540 MIMAT0037541 1 1479737 1479800 - Bilateria Bilateria No
Gja-Mir-96-P1 None MIR-96 UUGGCAC None None NW_015171061.1 26651 26714 + Bilateria Bilateria No 1
Hsa-Mir-96-P1 hsa-mir-96 MIR-96 UUGGCAC MIMAT0000095 MIMAT0004510 chr7 129774698 129774761 - Bilateria Bilateria No 1 1
Isc-Mir-96-P1 isc-mir-96 MIR-96 UUGGCAC MIMAT0012708 None DS633978 113225 113285 + Bilateria Bilateria No
Lan-Mir-96-P1 None MIR-96 UUGGCAC None None LFEI01000069 242267 242326 + Bilateria Bilateria Unknown 1 1
Lch-Mir-96-P1 None MIR-96 UUGGCAC None None JH127218.1 511439 511502 - Bilateria Bilateria Unknown 1
Loc-Mir-96-P1 None MIR-96 UUGGCAC None None LG8 20419908 20419971 - Bilateria Bilateria No 1
Mdo-Mir-96-P1 mdo-mir-96 MIR-96 UUGGCAC MIMAT0004147 None 8 189667862 189667925 - Bilateria Bilateria Unknown 1
Mml-Mir-96-P1 mml-mir-96 MIR-96 UUGGCAC MIMAT0002784 None chr3 155860132 155860195 - Bilateria Bilateria No 1 1
Mmu-Mir-96-P1 mmu-mir-96 MIR-96 UUGGCAC MIMAT0000541 MIMAT0017021 chr6 30169465 30169528 - Bilateria Bilateria No 1 1
Mun-Mir-96-P1 None MIR-96 UUGGCAC None None 96-P1_LR594641.1:18226534-18226797 101 164 + Bilateria Bilateria Unknown
Oan-Mir-96-P1 oan-mir-96 MIR-96 UUGGCAC MIMAT0006803 MIMAT0006804 NC_041737.1 47132591 47132654 - Bilateria Bilateria Unknown
Ocu-Mir-96-P1 ocu-mir-96 MIR-96 UUGGCAC MIMAT0048178 MIMAT0048179 chr7 14827059 14827122 + Bilateria Bilateria No 1 1
Pbv-Mir-96-P1 pbv-mir-96 MIR-96 UUGGCAC MIMAT0038891 MIMAT0038892 KE958924.1 47981 48044 - Bilateria Bilateria No 1
Pfl-Mir-96-P1 None MIR-96 UUGGCAC None None LD345584.1 198910 198968 - Bilateria Bilateria Unknown 1
Pmi-Mir-96-P1 pmi-mir-96 MIR-96 UUGGCAC MIMAT0032155 None JH769268.1 99565 99625 + Bilateria Bilateria No 1
Rno-Mir-96-P1 rno-mir-96 MIR-96 UUGGCAC MIMAT0000818 MIMAT0017110 chr4 57463385 57463448 - Bilateria Bilateria No 1 1
Sha-Mir-96-P1 None MIR-96 UUGGCAC None None GL861654.1 986305 986368 - Bilateria Bilateria Unknown 1
Sko-Mir-96-P1 sko-mir-96 MIR-96 UUGGCAC MIMAT0009622 MIMAT0019156 NW_003114962.1 36626 36685 + Bilateria Bilateria No 1
Spt-Mir-96-P1 None MIR-96 UUGGCAC None None QEPC01000343.1 788151 788214 - Bilateria Bilateria Unknown
Spu-Mir-96-P1 spu-mir-96 MIR-96 UUGGCAC MIMAT0009665 None AAGJ06000006.1 25937913 25937986 + Bilateria Bilateria No 1 1
Sto-Mir-96-P1 None MIR-96 UUGGCAC None None BFAA01006258.1 17893 17956 - Bilateria Bilateria No 1
Tgu-Mir-96-P1 None MIR-96 UUGGCAC None None gnl|ti|1263877921 262 325 - Bilateria Bilateria No
Xbo-Mir-96-P1 None MIR-96 UUGGCAC None None scaffold1822 63524 63583 + Bilateria Bilateria Unknown
Xtr-Mir-96-P1 xtr-mir-96 MIR-96 UUGGCAC MIMAT0003661 None chr3 77400820 77400883 + Bilateria Bilateria No
Dre-Mir-96-P1a dre-mir-96 MIR-96 UUGGCAC MIMAT0001811 MIMAT0031956 chr4 15074738 15074801 + Clupeocephala Bilateria No 1
Gmo-Mir-96-P1a gmo-mir-96 MIR-96 UUGGCAC MIMAT0044263 MIMAT0044264 GeneScaffold_4098 12976 13039 + Clupeocephala Bilateria No 1
Mal-Mir-96-P1a None MIR-96 UUGGCAC None None KV884729.1 3066031 3066094 - Clupeocephala Bilateria No 1
Tni-Mir-96-P1a tni-mir-96 MIR-96 UUGGCAC MIMAT0003092 None 19 3385392 3385455 - Clupeocephala Bilateria Unknown 1
Mal-Mir-96-P1b None MIR-96 UUGGCAC None None KV884693.1 181154 181217 + Clupeocephala Bilateria Unknown 1
Tni-Mir-96-P1b None MIR-96 UUGGCAC None None 13 5039982 5040043 - Clupeocephala Bilateria Unknown 1
Xla-Mir-96-P1c None MIR-96 UUGGCAC None None NC_030728.1 77406980 77407043 + X. laevis Bilateria No
Xla-Mir-96-P1d xla-mir-96 MIR-96 UUGGCAC MIMAT0046615 MIMAT0046616 NC_030729.1 63428529 63428592 - X. laevis Bilateria No
Ebu-Mir-96-P1e None MIR-96 UUGGCAC None None FYBX02009823.1 3449915 3449976 - E. burgeri Bilateria Unknown
Ebu-Mir-96-P1f None MIR-96 UUGGCAC None None FYBX02009661.1 1087770 1087831 - E. burgeri Bilateria Unknown 1
Ebu-Mir-96-P1g None MIR-96 UUGGCAC None None FYBX02000166.1 1306588 1306647 - E. burgeri Bilateria Unknown 1
Cgi-Mir-96-P1i None MIR-96 UUGGCAC None None scaffold591 1189388 1189446 - Mollusca Bilateria No 1 1
Lgi-Mir-96-P1i lgi-mir-96a MIR-96 UUGGCAC MIMAT0009575 None LOTGIsca_31 795528 795586 + Mollusca Bilateria Unknown 1
Npo-Mir-96-P1i None MIR-96 UUGGCAC None None JACATO010000647.1 143522 143579 - Mollusca Bilateria Unknown 1 1
Sme-Mir-96-P1j sme-mir-96a MIR-96 UUGGCAC MIMAT0011262 MIMAT0012159 NNSW01000022_dd_Smes_g4_22 4678463 4678530 + S. mediterranea Bilateria No 1
Sme-Mir-96-P1k sme-mir-96b MIR-96 UUGGCAC MIMAT0011273 MIMAT0012163 NNSW01000112_dd_Smes_g4_112 1967642 1967703 - S. mediterranea Bilateria Unknown 1
Pma-Mir-96-P1o1 pma-mir-96a MIR-96 UUGGCAC MIMAT0019436 None NC_046104.1 2252300 2252362 - P. marinus Bilateria Unknown 1 1
Pma-Mir-96-P1o2 None MIR-96 UUGGCAC None None NC_046114.1 7245787 7245851 + P. marinus Bilateria Unknown 1
Lpo-Mir-96-P1r-v1 None MIR-96 UUGGCAC None None NW_013665929.1 529176 529236 - L. polyphemus Bilateria No 1
Lpo-Mir-96-P1s None MIR-96 UUGGCAC None None NW_013666424.1 67024 67083 + L. polyphemus Bilateria Unknown 1
Lpo-Mir-96-P1t None MIR-96 UUGGCAC None None NW_013665634.1 1448182 1448242 + L. polyphemus Bilateria Unknown 1
Lpo-Mir-96-P1u None MIR-96 UUGGCAC None None NW_013665647.1 244610 244669 - L. polyphemus Bilateria Unknown 1
Csc-Mir-96-P1w None MIR-96 UUGGCAC None None NW_019385290.1 225058 225118 + C. sculpturatus Bilateria Unknown 1
Csc-Mir-96-P1x None MIR-96 UUGGCAC None None NW_019385963.1 35587 35647 - C. sculpturatus Bilateria Unknown 1
Aae-Mir-96-P2 aae-mir-263b MIR-96 UUGGCAC MIMAT0014309 MIMAT0014310 supercont1.28 2323846 2323911 + Bilateria Bilateria No 1
Asu-Mir-96-P2 asu-mir-228 MIR-96 UUGGCAC MIMAT0021503 MIMAT0021504 Scaffold583 160776 160838 - Bilateria Bilateria No
Bge-Mir-96-P2 None MIR-96 UUGGCAC None None KZ614838.1 241058 241116 - Bilateria Bilateria No
Cel-Mir-96-P2 cel-mir-790 MIR-96 UUGGCAC MIMAT0004225 MIMAT0020349 chrIV 5566427 5566488 + Bilateria Bilateria No
Cte-Mir-96-P2 cte-mir-263 MIR-96 UUGGCAC MIMAT0009529 None CAPTEscaffold_522 115197 115256 - Bilateria Bilateria Unknown 1
Dan-Mir-96-P2 dan-mir-263b MIR-96 UUGGCAC MIMAT0008447 None scaffold_13337 11320757 11320817 + Bilateria Bilateria No 1
Dma-Mir-96-P2 None MIR-96 UUGGCAC None None NC_046180.1 10114057 10114119 - Bilateria Bilateria No 1
Dme-Mir-96-P2 dme-mir-263b MIR-96 UUGGCAC MIMAT0000362 MIMAT0020822 3L 15843420 15843480 - Bilateria Bilateria No 1
Dpu-Mir-96-P2 dpu-mir-263b MIR-96 UUGGCAC MIMAT0012650 None DAPPUscaffold_87 475817 475879 + Bilateria Bilateria No 1
Dsi-Mir-96-P2 dsi-mir-263b MIR-96 UUGGCAC MIMAT0008871 None 3L 15464158 15464218 - Bilateria Bilateria No 1
Dya-Mir-96-P2 dya-mir-263b MIR-96 UUGGCAC MIMAT0009110 None 3L 18445413 18445473 - Bilateria Bilateria No 1
Hme-Mir-96-P2 hme-mir-263b MIR-96 UUGGCAC MIMAT0024950 None HE670415 2372 2433 - Bilateria Bilateria No 1 1
Isc-Mir-96-P2 None MIR-96 UUGGCAC None None DS633978 112831 112895 + Bilateria Bilateria Unknown
Lan-Mir-96-P2 None MIR-96 UUGGCAC None None LFEI01000342 90972 91032 - Bilateria Bilateria Unknown
Lgi-Mir-96-P2 lgi-mir-263a MIR-96 UUGGCAC MIMAT0009583 None LOTGIsca_71 757688 757746 + Bilateria Bilateria Unknown
Npo-Mir-96-P2 None MIR-96 UUGGCAC None None JACATO010002187.1 172147 172208 + Bilateria Bilateria Unknown
Obi-Mir-96-P2 None MIR-96 UUGGCAC None None KQ426020 10541 10601 - Bilateria Bilateria No 1
Ovu-Mir-96-P2 None MIR-96 UUGGCAC None None RXHP01002940.1 735 795 - Bilateria Bilateria No
Tca-Mir-96-P2 tca-mir-263b MIR-96 UUGGCAC MIMAT0008378 MIMAT0019122 LG3 4855287 4855345 + Bilateria Bilateria No
Bfl-Mir-96-P2g None MIR-96 UUGGCAC None None NC_049980.1 17527696 17527760 - Branchiostoma Bilateria Unknown
Bla-Mir-96-P2g None MIR-96 UUGGCAC None None xfSc0001431 1772 1836 + Branchiostoma Bilateria No
Bfl-Mir-96-P2h bfl-mir-182a MIR-96 UUGGCAC MIMAT0009486 None NC_049980.1 17548107 17548183 - Branchiostoma Bilateria Unknown 1
Bla-Mir-96-P2h None MIR-96 UUGGCAC None None Sc0000146 19736 19813 - Branchiostoma Bilateria No 1
Cgi-Mir-96-P2l None MIR-96 UUGGCAC None None scaffold626 26567 26631 + C. gigas Bilateria No 1
Cgi-Mir-96-P2m None MIR-96 UUGGCAC None None scaffold42648 4758 4816 + C. gigas Bilateria No 1
Efe-Mir-96-P2n None MIR-96 UUGGCAC None None Efet.01.342161 1259 1320 + E. fetida Bilateria No
Efe-Mir-96-P2o None MIR-96 UUGGCAC None None Efet.01.217172 1570 1639 + E. fetida Bilateria Unknown 1
Cbr-Mir-96-P2p cbr-mir-790-2 MIR-96 UUGGCAC MIMAT0004292 None IV 6048235 6048292 + C. briggsae Bilateria No 1
Cbr-Mir-96-P2q cbr-mir-790-1 MIR-96 UUGGCAC MIMAT0004292 None IV 6048856 6048920 + C. briggsae Bilateria No
Lpo-Mir-96-P2r None MIR-96 UUGGCAC None None NW_013665929.1 532168 532227 - L. polyphemus Bilateria Unknown
Lpo-Mir-96-P2s-v1 None MIR-96 UUGGCAC None None NW_013666424.1 65543 65602 + L. polyphemus Bilateria Unknown 1
Lpo-Mir-96-P2t-v1 None MIR-96 UUGGCAC None None NW_013665634.1 1447496 1447554 + L. polyphemus Bilateria Unknown 1
Lpo-Mir-96-P2u None MIR-96 UUGGCAC None None NW_013665647.1 245719 245777 - L. polyphemus Bilateria Unknown
Lpo-Mir-96-P2v-v1 None MIR-96 UUGGCAC None None NW_013665621.1 1338513 1338571 - L. polyphemus Bilateria Unknown
Csc-Mir-96-P2w None MIR-96 UUGGCAC None None NW_019385290.1 224908 224968 + C. sculpturatus Bilateria Unknown 1
Ocu-Mir-506-P2 ocu-mir-507 MIR-506 UUGGCAC MIMAT0048507 MIMAT0048508 chrUn0002 10707176 10707233 - Eutheria Eutheria Unknown 1
Cpo-Mir-506-P2b cpo-mir-507b MIR-506 UUGGCAC MIMAT0047317 MIMAT0047318 scaffold_84 2763265 2763322 + C. porcellus Eutheria No 1
Cfa-Mir-506-P2e cfa-mir-507b MIR-506 UUGGCAC None MIMAT0034416 chrX 115665393 115665450 - C. familiaris Eutheria No 1
Asu-Mir-791 asu-mir-791 MIR-791 UGGUCUG MIMAT0021529 MIMAT0021530 Scaffold287 265477 265534 - Chromadorea Chromadorea No 1
Cbr-Mir-791 cbr-mir-791 MIR-791 UUGGCAC None MIMAT0004293 X 11146148 11146211 + Chromadorea Chromadorea No
Cel-Mir-791 cel-mir-791 MIR-791 UUGGCAC MIMAT0020350 MIMAT0004226 chrX 5809361 5809423 + Chromadorea Chromadorea No 1
Bta-Mir-1271 bta-mir-1271 MIR-1271 UUGGCAC MIMAT0009975 None NC_037334.1 37843340 37843397 + Eutheria Eutheria No
Cfa-Mir-1271 cfa-mir-1271 MIR-1271 UUGGCAC MIMAT0006685 None chr4 36951021 36951078 - Eutheria Eutheria No
Cpo-Mir-1271 cpo-mir-1271 MIR-1271 UUGGCAC MIMAT0047411 MIMAT0047412 scaffold_17 22117662 22117719 + Eutheria Eutheria No
Dno-Mir-1271 None MIR-1271 UUGGCAC None None JH562710 929911 929968 + Eutheria Eutheria Unknown
Hsa-Mir-1271 hsa-mir-1271 MIR-1271 UUGGCAC MIMAT0005796 MIMAT0022712 chr5 176367960 176368017 + Eutheria Eutheria No
Mml-Mir-1271 mml-mir-1271 MIR-1271 UUGGCAC MIMAT0024315 MIMAT0027108 chr6 174823249 174823306 + Eutheria Eutheria No
Mmu-Mir-1271 None MIR-1271 UUGGCAC None None chr13 54578152 54578210 + Eutheria Eutheria Unknown
Rno-Mir-1271 None MIR-1271 UUGGCAC None None chr17 10572276 10572334 - Eutheria Eutheria Unknown
Bfl-Mir-4871 bfl-mir-4871 MIR-4871 UUGGCAC MIMAT0020112 MIMAT0020113 NW_023365955.1 83221 83283 - Branchiostoma Branchiostoma No 1
Bla-Mir-4871 None MIR-4871 UUGGCAC None None Sc0000001 4527408 4527470 + Branchiostoma Branchiostoma No 1
Asu-Mir-5350-P1 asu-mir-5350a MIR-5350 UUGGCAC MIMAT0021552 MIMAT0021553 Scaffold730 214863 214919 + A. suum A. suum No 1
Asu-Mir-5350-P2 asu-mir-5350b MIR-5350 UUGGCAC MIMAT0021554 MIMAT0021555 Scaffold1190 38567 38623 - A. suum A. suum No 1
Asu-Mir-5350-P3 asu-mir-5350c MIR-5350 UUGGCAC MIMAT0021556 MIMAT0021557 Scaffold1190 38272 38328 - A. suum A. suum No
Asu-Mir-5350-P4 asu-mir-5350d MIR-5350 UUGGCAC MIMAT0021558 MIMAT0021559 Scaffold123 289536 289593 - A. suum A. suum No
Asu-Mir-5350-P5 asu-mir-5351 MIR-5350 UUGGCAC MIMAT0021560 MIMAT0021561 Scaffold95 1540197 1540253 + A. suum A. suum No
Asu-Mir-5350-P6 asu-mir-5354 MIR-5350 CGGGUAU MIMAT0021568 MIMAT0021569 Scaffold800 97547 97610 - A. suum A. suum No

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