MirGeneDB 2.1
41 microRNA genes with seed CACAGCC
Sort by genome coordinates Motifs
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Npo-Mir-2-o20 None MIR-2 CACAGCC None None JACATO010000013.1 409573 409633 + Cephalopoda Protostomia Unknown 1
Esc-Mir-2-o20-v1 None MIR-2 CACAGCC None None Esc-Mir-2-o20-v1_pre_SRIE01000454.1:381798-382057 101 160 + Cephalopoda Protostomia No 1
Obi-Mir-2-o20-v1 None MIR-2 CACAGCC None None KQ419829 51363 51423 - Cephalopoda Protostomia No 1
Ovu-Mir-2-o20-v1 None MIR-2 CACAGCC None None RXHP01057295.1 23280 23340 - Cephalopoda Protostomia No 1
Esc-Mir-2-o21 None MIR-2 CACAGCC None None Esc-Mir-2-o21_pre_SRIE01000454.1:381988-382249 101 162 + Cephalopoda Protostomia No 1
Obi-Mir-2-o22a None MIR-2 CACAGCC None None KQ419829 51011 51070 - Octopus Protostomia No 1
Ovu-Mir-2-o22a None MIR-2 CACAGCC None None RXHP01057295.1 22936 22995 - Octopus Protostomia No 1
Npo-Mir-2-o22f None MIR-2 CACAGCC None None JACATO010000013.1 409822 409878 + N. pompilius Protostomia Unknown 1
Npo-Mir-2-o23 None MIR-2 CACAGCC None None JACATO010000013.1 410351 410408 + Cephalopoda Protostomia Unknown 1 1
Obi-Mir-2-o23 None MIR-2 CACAGCC None None KQ419829 49652 49710 - Cephalopoda Protostomia No 1 1
Esc-Mir-2-o23-v1 None MIR-2 CACAGCC None None Esc-Mir-2-o23-v1_pre_SRIE01000454.1:384530-384793 101 164 + Cephalopoda Protostomia No 1 1
Ovu-Mir-2-o23-v1 None MIR-2 CACAGCC None None RXHP01057295.1 21562 21620 - Cephalopoda Protostomia No 1 1
Cgi-Mir-2-o28 None MIR-2 CACAGCC None None scaffold602 445001 445057 + C. gigas Protostomia No 1
Cte-Mir-2-o36 cte-mir-2b MIR-2 CACAGCC None MIMAT0009504 CAPTEscaffold_933 10045 10113 + C. teleta Protostomia No 1
Sme-Mir-2-o58 sme-mir-2b MIR-2 CAUCAUU MIMAT0003965 MIMAT0003966 NNSW01000014_dd_Smes_g4_14 3096425 3096480 + S. mediterranea Protostomia No 1
Dmo-Mir-2-P1 dmo-mir-2c MIR-2 CACAGCC None MIMAT0008652 scaffold_6540 10568108 10568173 + Arthropoda Protostomia No
Dan-Mir-2-P1-v1 dan-mir-2c MIR-2 CACAGCC None MIMAT0008442 scaffold_13340 12827849 12827913 - Arthropoda Protostomia No
Dme-Mir-2-P1-v1 dme-mir-2c MIR-2 CACAGCC MIMAT0020845 MIMAT0000411 3R 15417760 15417826 - Arthropoda Protostomia No
Dsi-Mir-2-P1-v1 dsi-mir-2c MIR-2 CACAGCC None MIMAT0008854 3R 9985314 9985380 + Arthropoda Protostomia No
Dya-Mir-2-P1-v1 dya-mir-2c MIR-2 CACAGCC None MIMAT0009097 3R 15188380 15188446 + Arthropoda Protostomia No
Tca-Mir-2-P1-v1 tca-mir-2-3 MIR-2 CACAGCC MIMAT0019093 MIMAT0008353 LG3 560832 560890 + Arthropoda Protostomia No 1
Aae-Mir-2-P1-v2 aae-mir-2c MIR-2 CACAGCC None MIMAT0014308 supercont1.268 889091 889155 - Arthropoda Protostomia No
Bge-Mir-2-P1-v2 None MIR-2 CACAGCC None None KZ615136.1 496135 496196 + Arthropoda Protostomia No 1
Hme-Mir-2-P1-v2 hme-mir-2a MIR-2 CACAGCC None MIMAT0024971 HE671256 344481 344540 + Arthropoda Protostomia No 1 1
Hme-Mir-2-P3-v2 hme-mir-2b MIR-2 CACAGCC None MIMAT0024972 HE671256 344897 344955 + Arthropoda Protostomia No 1 1
Tca-Mir-2-P3-v2 tca-mir-2-1 MIR-2 CACAGCC MIMAT0019094 MIMAT0008353 LG3 561198 561260 + Arthropoda Protostomia No 1
Aae-Mir-2-P4-v2 aae-mir-2b MIR-2 CACAGCC None MIMAT0014306 supercont1.268 887257 887317 - Arthropoda Protostomia No
Tca-Mir-2-P4-v2 tca-mir-2-2 MIR-2 CACAGCC MIMAT0019096 MIMAT0008353 LG3 561348 561412 + Arthropoda Protostomia No 1
Dan-Mir-2-P4a-v2 dan-mir-2a-1 MIR-2 CACAGCC None MIMAT0008414 scaffold_12916 12013671 12013735 + Drosophila Protostomia No 1
Dme-Mir-2-P4a-v2 dme-mir-2a-1 MIR-2 CACAGCC MIMAT0020780 MIMAT0000106 2L 19569901 19569966 - Drosophila Protostomia No 1
Dmo-Mir-2-P4a-v2 dmo-mir-2a-1 MIR-2 CACAGCC None MIMAT0008672 scaffold_6500 6908329 6908396 + Drosophila Protostomia No 1
Dsi-Mir-2-P4a-v2 dsi-mir-2a-1 MIR-2 CACAGCC None MIMAT0008853 2L 19065589 19065654 - Drosophila Protostomia No 1
Dya-Mir-2-P4a-v2 dya-mir-2a-1 MIR-2 CACAGCC None MIMAT0009106 2R 6066959 6067024 - Drosophila Protostomia No 1
Dan-Mir-2-P4b-v2 dan-mir-2a-2 MIR-2 CACAGCC None MIMAT0008414 scaffold_12916 12013993 12014052 + Drosophila Protostomia No
Dme-Mir-2-P4b-v2 dme-mir-2a-2 MIR-2 CACAGCC MIMAT0020781 MIMAT0000106 2L 19569495 19569554 - Drosophila Protostomia No
Dmo-Mir-2-P4b-v2 dmo-mir-2a-2 MIR-2 CACAGCC None MIMAT0008672 scaffold_6500 6908917 6908978 + Drosophila Protostomia No 1 1
Dsi-Mir-2-P4b-v2 dsi-mir-2a-2 MIR-2 CACAGCC None MIMAT0008853 2L 19065170 19065229 - Drosophila Protostomia No
Dya-Mir-2-P4b-v2 dya-mir-2a-2 MIR-2 CACAGCC None MIMAT0009106 2R 6066569 6066628 - Drosophila Protostomia No
Bge-Mir-2-P4c-v2 None MIR-2 CACAGCC None None KZ615436.1 353745 353804 - B. germanica Protostomia No 1 1 1
Bge-Mir-2-P4d-v2 None MIR-2 CACAGCC None None KZ615436.1 350982 351043 - B. germanica Protostomia No 1 1
Mml-Novel-4 None MML-NOVEL-4 CACAGCC None None chr15 43444887 43444947 - M. mulatta M. mulatta No 1

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