MirGeneDB 2.1

24 microRNA genes with node of origin H. vulgaris
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Hvu-Mir-3003-P1 None MIR-3003 AAAUGUG None None Sc4wPfr_796 523053 523102 - H. vulgaris H. vulgaris No
Hvu-Mir-3003-P2 None MIR-3003 UAAAUGU None None Sc4wPfr_90 71712 71761 + H. vulgaris H. vulgaris No 1
Hvu-Mir-3005 None MIR-3005 GGAACCG None None Sc4wPfr_198 1138053 1138103 - H. vulgaris H. vulgaris No
Hvu-Mir-3007-v1 None MIR-3007 GUUCGGC None None Sc4wPfr_3789 111110 111160 + H. vulgaris H. vulgaris No 1
Hvu-Mir-3007-v2 None MIR-3007 UGUUCGG None None Sc4wPfr_3789 111109 111161 + H. vulgaris H. vulgaris No 1
Hvu-Mir-3010 None MIR-3010 GAGAGCG None None Sc4wPfr_1021 42949 42998 + H. vulgaris H. vulgaris No
Hvu-Mir-3011 None MIR-3011 UGAUUUU None None Sc4wPfr_481 321826 321879 - H. vulgaris H. vulgaris No 1
Hvu-Mir-3012 None MIR-3012 CAGUGGA None None Sc4wPfr_42.2 1039725 1039778 + H. vulgaris H. vulgaris No
Hvu-Novel-1 None HVU-NOVEL-1 AGAAAAU None None Sc4wPfr_1951 2522 2571 - H. vulgaris H. vulgaris No
Hvu-Novel-2 None HVU-NOVEL-2 AAAUUUC None None Sc4wPfr_39 1438574 1438630 + H. vulgaris H. vulgaris No
Hvu-Novel-3-v1 None HVU-NOVEL-3 AUGCUUU None None Sc4wPfr_1174 5861 5911 - H. vulgaris H. vulgaris No
Hvu-Novel-3-v2 None HVU-NOVEL-3 UAUGCUU None None Sc4wPfr_1174 5861 5911 - H. vulgaris H. vulgaris No
Hvu-Novel-4 None HVU-NOVEL-4 GAAAAUG None None Sc4wPfr_262.2 1237021 1237069 - H. vulgaris H. vulgaris No
Hvu-Novel-5 None HVU-NOVEL-5 GAAAGUC None None Sc4wPfr_628 712925 712976 - H. vulgaris H. vulgaris No
Hvu-Novel-6 None HVU-NOVEL-6 AGAUUAA None None Sc4wPfr_275 235406 235456 - H. vulgaris H. vulgaris No
Hvu-Novel-7 None HVU-NOVEL-7 ACUGAUA None None Sc4wPfr_165 2626433 2626482 - H. vulgaris H. vulgaris No 1
Hvu-Novel-8 None HVU-NOVEL-8 GAGAACU None None Sc4wPfr_341 579915 579966 + H. vulgaris H. vulgaris No
Hvu-Novel-9 None HVU-NOVEL-9 AACUUUG None None Sc4wPfr_1096 115465 115515 - H. vulgaris H. vulgaris No
Hvu-Novel-10 None HVU-NOVEL-10 CCAAAUA None None Sc4wPfr_14 286657 286707 + H. vulgaris H. vulgaris No 1
Hvu-Novel-11 None HVU-NOVEL-11 AGCUCUU None None Sc4wPfr_166.1 232089 232140 + H. vulgaris H. vulgaris No
Hvu-Novel-12 None HVU-NOVEL-12 UUCAUUA None None Sc4wPfr_92 465151 465200 - H. vulgaris H. vulgaris No 1
Hvu-Novel-13 None HVU-NOVEL-13 CCAAAUG None None Sc4wPfr_385 256480 256529 + H. vulgaris H. vulgaris No
Hvu-Novel-14 None HVU-NOVEL-14 AUGUUGA None None Sc4wPfr_1761 52941 52992 - H. vulgaris H. vulgaris No
Hvu-Novel-15 None HVU-NOVEL-15 GACAUAG None None Sc4wPfr_226.1 1498610 1498660 + H. vulgaris H. vulgaris No

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