MirGeneDB ID | Loc-Mir-31-P8 |
Family name |
MIR-31 (all species) |
Seed |
GGCAAGA |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-31-P9
|
Orthologues |
Aae-Mir-31
Aca-Mir-31
Ami-Mir-31
Asu-Mir-31
Bfl-Mir-31
Bge-Mir-31
Bla-Mir-31
Bpl-Mir-31
Bta-Mir-31
Cbr-Mir-31
Cel-Mir-31
Cfa-Mir-31
Cgi-Mir-31
Cin-Mir-31
Cli-Mir-31
Cmi-Mir-31
Cpi-Mir-31
Cpo-Mir-31
Cte-Mir-31
Dma-Mir-31
Dno-Mir-31
Dpu-Mir-31
Dre-Mir-31
Ebu-Mir-31
Efe-Mir-31
Esc-Mir-31
Ete-Mir-31
Gga-Mir-31
Gmo-Mir-31
Hme-Mir-31
Hsa-Mir-31
Isc-Mir-31
Lch-Mir-31
Lgi-Mir-31
Mal-Mir-31
Mdo-Mir-31
Mml-Mir-31
Mmu-Mir-31
Mun-Mir-31
Npo-Mir-31
Oan-Mir-31
Obi-Mir-31
Ocu-Mir-31
Ovu-Mir-31
Pbv-Mir-31
Pfl-Mir-31
Rno-Mir-31
Sha-Mir-31
Sko-Mir-31
Spt-Mir-31
Spu-Mir-31
Sto-Mir-31
Tca-Mir-31
Tgu-Mir-31
Tni-Mir-31
Xbo-Mir-31
Xtr-Mir-31
|
Node of Origin (locus) |
L. oculatus
|
Node of Origin (family) |
Bilateria
|
Genome context (LepOcu1) |
LG4: 45815911-45815970 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUGCUGUUUGAGUCUGGGACAAGGAGAGAAGGCAAGAUGUUGGCAUAGCUGUUGAGUUCAGGGACCUGCUAUGCUGUCAUAUUGCCCUGUUUCCUAUCCAUCUGCUGCAAGAUGCUGUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUGCUGUUUGAGUCUG---| CA GAA G U UGUUGAGU
GGA AGGAGA GGCAA AUG UGGCAUAGC U
CCU UCCUUU CCGUU UAC GUCGUAUCG C
GUGUCGUAGAACGUCGUCUA^ A- GUC A U UCCAGGGA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Mature sequence |
Loc-Mir-31-P8_5p |
mirBase accession | None |
Sequence |
0- AGGCAAGAUGUUGGCAUAGCUGU -23
Get sequence
|
Star sequence |
Loc-Mir-31-P8_3p* |
mirBase accession | None |
Sequence |
37- UGCUAUGCUGUCAUAUUGCCCUG -60
Get sequence
|